MLOC_77998 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4032530.2282920.06015820.231473
LEAShoots from the seedlings (10 cm shoot stage)0.1067410.2940980.1245240.151966
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0182663000.0228882
ROORoots from the seedlings (10 cm shoot stage)1.089940.6583220.3639250.751803
NODDeveloping tillers at six leaf stage, 3rd internode0.4785970.6522012.708433.08828
CAR5Developing grain, bracts removed (5 DPA)0.06661330.0633690.08548280.0759884
CAR15Developing grain, bracts removed (15 DPA)0.4621830.3546070.4591181.0886



CDS Structure of MLOC_77998






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77998.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77998.1CUST_16477_PI427708080AvailableAvailablecontig_78203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36848.1 +1 0.0 741 407/533 (76%) 13110.m03345 protein cytochrome P450, putative, expressed
TAIR PP10 AT4G36220.1 +1 0.0 608 307/481 (64%) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520