MLOC_77955 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.951331.593662.069142.16451
LEAShoots from the seedlings (10 cm shoot stage)2.845864.096935.310563.36417
INF1Young developing inflorescences (5mm)11.869312.423415.387812.8051
INF2Developing inflorescences (1-1.5 cm)6.7613610.39099.8337611.6338
ROORoots from the seedlings (10 cm shoot stage)1.26851.01382.089491.40475
NODDeveloping tillers at six leaf stage, 3rd internode8.7839817.493422.951146.9211
CAR5Developing grain, bracts removed (5 DPA)4.437124.726135.307465.63221
CAR15Developing grain, bracts removed (15 DPA)0.5903810.1725160.3239990.959064



CDS Structure of MLOC_77955






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77955.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77955.2CUST_16468_PI427708080AvailableAvailablecontig_78074 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g27450.1 +2 9e-68 220 107/113 (95%) 13109.m02671 protein homeobox associated leucine zipper, putative, expressed
TAIR PP10 AT5G06710.1 +2 2e-62 204 99/113 (88%) | Symbols: HAT14 | homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336