MLOC_77923 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.987353.376644.109913.94832
LEAShoots from the seedlings (10 cm shoot stage)4.8816.319217.612725.24699
INF1Young developing inflorescences (5mm)3.217343.067444.315872.94948
INF2Developing inflorescences (1-1.5 cm)4.384413.668674.875454.66484
ROORoots from the seedlings (10 cm shoot stage)6.475935.776957.893477.33288
NODDeveloping tillers at six leaf stage, 3rd internode6.559717.8074511.518727.1248
CAR5Developing grain, bracts removed (5 DPA)4.116145.46614.712234.84735
CAR15Developing grain, bracts removed (15 DPA)3.942353.329472.258687.8874



CDS Structure of MLOC_77923






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77923.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355852NoneNoneNoneNone
MLOC_77923.2CUST_6666_PI427708080AvailableAvailablecontig_7795 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g46590.2 +3 4e-96 294 167/209 (80%) 13106.m10572 protein expressed protein
TAIR PP10 AT4G26980.1 +3 5e-80 256 162/303 (53%) RNI-like superfamily protein | chr4:13548813-13550644 REVERSE LENGTH=343