MLOC_77860 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.35612.710812.553614.2207
LEAShoots from the seedlings (10 cm shoot stage)39.360845.564660.700539.7157
INF1Young developing inflorescences (5mm)8.487887.744437.875867.22355
INF2Developing inflorescences (1-1.5 cm)3.46684.747284.567724.95134
ROORoots from the seedlings (10 cm shoot stage)2.563533.691443.641164.13685
NODDeveloping tillers at six leaf stage, 3rd internode13.490516.111519.330846.7959
CAR5Developing grain, bracts removed (5 DPA)10.969611.821710.47811.4925
CAR15Developing grain, bracts removed (15 DPA)0.706781.050860.872792.36244



CDS Structure of MLOC_77860






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77860.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368162NoneNoneNoneNone
MLOC_77860.1CUST_6664_PI427708080AvailableAvailablecontig_77635 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43070.1 +3 4e-132 390 193/250 (77%) 13101.m04440 protein psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed
TAIR PP10 AT5G11450.1 +3 2e-108 327 160/255 (63%) Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr5:3654475-3656357 FORWARD LENGTH=297