MLOC_77840 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1421.511122.541201.181204.72
LEAShoots from the seedlings (10 cm shoot stage)1173.39760.656706.901744.442
INF1Young developing inflorescences (5mm)1543.851527.231743.991303.44
INF2Developing inflorescences (1-1.5 cm)1669.691470.211793.961688.55
ROORoots from the seedlings (10 cm shoot stage)1960.661420.842060.321857.79
NODDeveloping tillers at six leaf stage, 3rd internode910.351727.0271017.252449.26
CAR5Developing grain, bracts removed (5 DPA)696.698759.274678.255678.348
CAR15Developing grain, bracts removed (15 DPA)384.439350.7359.424821.267



CDS Structure of MLOC_77840






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77840.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368349NoneNoneNoneNone
MLOC_77840.1CUST_6663_PI427708080AvailableAvailablecontig_7750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g43900.1 +3 2e-91 275 140/168 (83%) 13111.m04379 protein translationally-controlled tumor protein, putative, expressed
TAIR PP10 AT3G16640.1 +3 1e-78 241 126/168 (75%) | Symbols: TCTP | translationally controlled tumor protein | chr3:5669709-5670729 REVERSE LENGTH=168