MLOC_7780 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.948640.612840.067240.4768
LEAShoots from the seedlings (10 cm shoot stage)28.888224.55734.89225.0949
INF1Young developing inflorescences (5mm)29.613830.980731.801126.0291
INF2Developing inflorescences (1-1.5 cm)16.61420.68618.96120.7902
ROORoots from the seedlings (10 cm shoot stage)72.300557.490374.238972.4911
NODDeveloping tillers at six leaf stage, 3rd internode28.817430.162229.4169102.737
CAR5Developing grain, bracts removed (5 DPA)44.591246.789643.594944.3328
CAR15Developing grain, bracts removed (15 DPA)32.831833.790929.263173.9647



CDS Structure of MLOC_7780






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_7780.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_7780.1CUST_16456_PI427708080AvailableAvailablecontig_140117 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g33720.1 -2 0.0 644 337/384 (88%) 13108.m03518 protein lactate/malate dehydrogenase, putative, expressed
TAIR PP10 AT3G47520.1 -2 0.0 537 277/346 (80%) | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403