MLOC_77777 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.86816.325157.760229.26897
LEAShoots from the seedlings (10 cm shoot stage)2.158630.6456110.5331770.946919
INF1Young developing inflorescences (5mm)0.07466620.0293340.09649080.0744133
INF2Developing inflorescences (1-1.5 cm)1.22750.1737541.319251.04138
ROORoots from the seedlings (10 cm shoot stage)10.704112.74437.6383117.6212
NODDeveloping tillers at six leaf stage, 3rd internode0.378830.231780.02649370.512047
CAR5Developing grain, bracts removed (5 DPA)00.02851700.0509837
CAR15Developing grain, bracts removed (15 DPA)0.237060.1251290.2180280.545012



CDS Structure of MLOC_77777






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77777.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368600NoneNoneNoneNone
MLOC_77777.3CUST_6660_PI427708080AvailableAvailablecontig_77180 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46480.2 +2 4e-38 139 110/198 (56%) 13105.m04962 protein late embryogenesis abundant protein, group 3, putative, expressed
TAIR PP10 AT3G15670.1 +2 9e-26 104 85/227 (37%) Late embryogenesis abundant protein (LEA) family protein | chr3:5310141-5310901 REVERSE LENGTH=225