MLOC_77683 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.503059.906168.297838.56614
LEAShoots from the seedlings (10 cm shoot stage)37.411227.463121.71223.9736
INF1Young developing inflorescences (5mm)20.2116.562217.848316.6027
INF2Developing inflorescences (1-1.5 cm)14.157115.487514.404117.5964
ROORoots from the seedlings (10 cm shoot stage)0.8216991.843062.625152.25418
NODDeveloping tillers at six leaf stage, 3rd internode5.760925.814194.8592516.3088
CAR5Developing grain, bracts removed (5 DPA)15.632513.950712.767815.0743
CAR15Developing grain, bracts removed (15 DPA)2.054122.031482.190755.34



CDS Structure of MLOC_77683






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77683.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77683.1CUST_16439_PI427708080AvailableAvailablecontig_76706 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g01400.1 -3 8e-179 530 256/265 (97%) 13106.m00042 protein glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed
TAIR PP10 AT3G48110.1 -3 2e-164 492 234/265 (88%) | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:17763111-17770964 FORWARD LENGTH=1067