MLOC_77643 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.00393.137522.647671.83348
LEAShoots from the seedlings (10 cm shoot stage)14.574715.993216.17849.17313
INF1Young developing inflorescences (5mm)2.418533.073943.330971.57217
INF2Developing inflorescences (1-1.5 cm)4.553593.293782.51172.94164
ROORoots from the seedlings (10 cm shoot stage)1.643271.03241.015280.945104
NODDeveloping tillers at six leaf stage, 3rd internode6.451924.946246.1949211.4913
CAR5Developing grain, bracts removed (5 DPA)2.264993.051093.889491.91914
CAR15Developing grain, bracts removed (15 DPA)1.177520.5417481.407151.63606



CDS Structure of MLOC_77643






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77643.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77643.1NoneAvailableAvailablecontig_76536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g15460.2 -1 2e-52 179 91/112 (81%) 13108.m01652 protein preprotein translocase subunit secY, putative, expressed
TAIR PP10 AT2G18710.1 -1 7e-49 173 88/112 (79%) | Symbols: SCY1 | SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551