MLOC_77536 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains359.124237.478252.21253.654
LEAShoots from the seedlings (10 cm shoot stage)192.7393.3175190.863116.8
INF1Young developing inflorescences (5mm)29.761940.327245.947332.7361
INF2Developing inflorescences (1-1.5 cm)39.655741.594639.762243.8791
ROORoots from the seedlings (10 cm shoot stage)888.286483.125392.782526.719
NODDeveloping tillers at six leaf stage, 3rd internode305.716304.879104.569563.796
CAR5Developing grain, bracts removed (5 DPA)59.105359.281153.902356.0769
CAR15Developing grain, bracts removed (15 DPA)59.469869.059455.0532153.739



CDS Structure of MLOC_77536






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77536.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252865.1NoneNoneNoneNone
MLOC_77536.1CUST_6646_PI427708080AvailableAvailablecontig_76080 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44180.1 -3 3e-20 84 53/57 (93%) 13107.m04647 protein OsRCI2-10 - Hydrophobic protein LTI6A, expressed
TAIR PP10 AT3G05890.1 -3 4e-14 66 26/36 (72%) | Symbols: RCI2B | Low temperature and salt responsive protein family | chr3:1758179-1758452 REVERSE LENGTH=54