MLOC_77533 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9287921.043121.460751.13909
LEAShoots from the seedlings (10 cm shoot stage)0.2821440.3237690.3135530.252952
INF1Young developing inflorescences (5mm)0.5139840.5021640.4782960.438734
INF2Developing inflorescences (1-1.5 cm)0.930340.7538280.3531850.833621
ROORoots from the seedlings (10 cm shoot stage)00.400320.252160.462835
NODDeveloping tillers at six leaf stage, 3rd internode0.6082261.021930.5317282.5109
CAR5Developing grain, bracts removed (5 DPA)0.9046120.3123720.4275670.563758
CAR15Developing grain, bracts removed (15 DPA)0.2222260.083801100.514079



CDS Structure of MLOC_77533






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77533.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77533.1CUST_10354_PI427708083AvailableAvailablecontig_76077 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g26850.2 -2 5e-43 143 73/117 (62%) 13111.m02570 protein erythronate-4-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT4G13940.1 -2 4e-39 129 64/117 (55%) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485