MLOC_77520 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.986892.467473.223353.11406
LEAShoots from the seedlings (10 cm shoot stage)5.16116.877846.937315.96914
INF1Young developing inflorescences (5mm)1.721021.67871.810441.56156
INF2Developing inflorescences (1-1.5 cm)3.037672.351543.498543.33076
ROORoots from the seedlings (10 cm shoot stage)3.455354.054324.30395.50552
NODDeveloping tillers at six leaf stage, 3rd internode5.936398.473229.7664931.4256
CAR5Developing grain, bracts removed (5 DPA)6.55745.930456.54336.71827
CAR15Developing grain, bracts removed (15 DPA)3.396223.172413.249668.03638



CDS Structure of MLOC_77520






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77520.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77520.1CUST_10352_PI427708083AvailableAvailablecontig_7601 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g46020.1 -1 8e-127 384 243/450 (54%) 13104.m04622 protein GATA zinc finger domain containing protein, expressed
TAIR PP10 AT4G17570.3 -1 4e-57 202 137/316 (43%) | Symbols: GATA26 | GATA transcription factor 26 | chr4:9784329-9786974 REVERSE LENGTH=514