MLOC_77453 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.794412.186410.769212.654
LEAShoots from the seedlings (10 cm shoot stage)11.885911.814320.814214.2833
INF1Young developing inflorescences (5mm)13.601412.612113.329810.9037
INF2Developing inflorescences (1-1.5 cm)8.652438.410158.538199.69266
ROORoots from the seedlings (10 cm shoot stage)9.8180910.82849.8432314.7996
NODDeveloping tillers at six leaf stage, 3rd internode10.51939.2008817.754715.4
CAR5Developing grain, bracts removed (5 DPA)7.434527.907918.211128.36367
CAR15Developing grain, bracts removed (15 DPA)1.293741.972171.866833.8029



CDS Structure of MLOC_77453






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77453.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77453.1CUST_13289_PI427708083AvailableAvailablecontig_75700 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g53720.2 -1 2e-109 349 173/199 (87%) 13101.m15073 protein expressed protein
TAIR PP10 AT2G25870.1 -1 7e-92 301 140/199 (70%) haloacid dehalogenase-like hydrolase family protein | chr2:11031159-11034302 FORWARD LENGTH=584