MLOC_77428 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6926120.5694920.9632930.762822
LEAShoots from the seedlings (10 cm shoot stage)1.173431.076770.8146490.963491
INF1Young developing inflorescences (5mm)29.552930.153330.397527.7198
INF2Developing inflorescences (1-1.5 cm)37.175637.096235.760543.299
ROORoots from the seedlings (10 cm shoot stage)0.6719811.022271.095211.36925
NODDeveloping tillers at six leaf stage, 3rd internode10.860813.59869.9884147.5696
CAR5Developing grain, bracts removed (5 DPA)14.535112.222313.334414.0203
CAR15Developing grain, bracts removed (15 DPA)0.802970.8739830.9324972.14158



CDS Structure of MLOC_77428






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77428.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366401NoneNoneNoneNone
MLOC_77428.4CUST_18469_PI427708080AvailableAvailablecontig_7549 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g39260.1 -1 0.0 607 363/647 (56%) 13101.m04007 protein OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
TAIR PP10 AT2G26140.1 -1 0.0 581 339/540 (63%) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717