MLOC_77387 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.163317.009316.608114.7308
LEAShoots from the seedlings (10 cm shoot stage)20.305116.910320.386215.4901
INF1Young developing inflorescences (5mm)26.650628.161830.369221.1655
INF2Developing inflorescences (1-1.5 cm)35.737838.972638.076436.8975
ROORoots from the seedlings (10 cm shoot stage)15.656220.789316.319121.5265
NODDeveloping tillers at six leaf stage, 3rd internode16.041820.766523.081965.5248
CAR5Developing grain, bracts removed (5 DPA)27.151925.871528.908423.3395
CAR15Developing grain, bracts removed (15 DPA)16.695415.693316.100232.2618



CDS Structure of MLOC_77387






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77387.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77387.2CUST_16406_PI427708080AvailableAvailablecontig_75422 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15020.2 -2 3e-79 281 135/167 (81%) 13101.m01663 protein lissencephaly type-1-like homology motif, putative, expressed
TAIR PP10 AT3G16830.1 -2 1e-73 263 123/166 (74%) | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131