MLOC_77348 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.090845200.2617770.0715508
LEAShoots from the seedlings (10 cm shoot stage)0.3238640.6547960.3052640.303395
INF1Young developing inflorescences (5mm)0.2753940.3527440.1805050.191814
INF2Developing inflorescences (1-1.5 cm)0.2038580.2959590.5138180.277635
ROORoots from the seedlings (10 cm shoot stage)0.3840880.439030.5497090.408878
NODDeveloping tillers at six leaf stage, 3rd internode0.2535750.3960890.1408880.43892
CAR5Developing grain, bracts removed (5 DPA)0.2262230.3225730.3123380.230501
CAR15Developing grain, bracts removed (15 DPA)0.1328270.2091390.1220320.285317



CDS Structure of MLOC_77348






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77348.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77348.1NoneAvailableAvailablecontig_75232 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g04070.1 -2 4e-40 157 77/110 (70%) 13102.m00408 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT5G62980.1 +3 5e-19 85 43/75 (57%) | Symbols: FOLB2 | Dihydroneopterin aldolase | chr5:25276384-25277083 FORWARD LENGTH=131