MLOC_77340 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.14834700.06162370.118518
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.03790620.04042310.2218570.0834702
INF2Developing inflorescences (1-1.5 cm)0.2561230.2575670.06075190.215101
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.4451820.2212540.30220.306611
CAR15Developing grain, bracts removed (15 DPA)1.36231.490771.15763.28939



CDS Structure of MLOC_77340






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77340.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77340.1CUST_10336_PI427708083AvailableAvailablecontig_7521 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g62490.1 +1 2e-25 75 44/82 (54%) 13103.m06898 protein prohibitin-2, putative, expressed
TAIR PP10 AT1G03860.3 +1 2e-34 72 42/73 (58%) | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:979611-981157 REVERSE LENGTH=286