MLOC_77252 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.391910.861112.146510.5104
LEAShoots from the seedlings (10 cm shoot stage)4.518840.891322.330012.11034
INF1Young developing inflorescences (5mm)3.424315.102054.554383.11202
INF2Developing inflorescences (1-1.5 cm)3.900175.20965.223384.40001
ROORoots from the seedlings (10 cm shoot stage)4.136663.17253.459643.22523
NODDeveloping tillers at six leaf stage, 3rd internode1.154521.005710.7032982.66846
CAR5Developing grain, bracts removed (5 DPA)7.358067.064046.823875.7352
CAR15Developing grain, bracts removed (15 DPA)0.198150.5224450.5814950.731642



CDS Structure of MLOC_77252






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77252.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376250NoneNoneNoneNone
MLOC_77252.2CUST_6625_PI427708080AvailableAvailablecontig_7491 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g56820.1 +3 7e-153 439 198/236 (84%) 13103.m06210 protein fatty acid hydroxylase, putative, expressed
TAIR PP10 AT2G34770.1 +3 2e-126 370 162/231 (70%) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237