MLOC_77194 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.205454.730640.477841.3502
LEAShoots from the seedlings (10 cm shoot stage)41.330646.813827.482827.408
INF1Young developing inflorescences (5mm)43.673545.929953.743931.9742
INF2Developing inflorescences (1-1.5 cm)37.661832.513429.267232.2212
ROORoots from the seedlings (10 cm shoot stage)39.64346.70920.383441.3078
NODDeveloping tillers at six leaf stage, 3rd internode21.161945.261140.6552107.421
CAR5Developing grain, bracts removed (5 DPA)32.15827.914326.162724.039
CAR15Developing grain, bracts removed (15 DPA)8.2766411.37939.4845617.3169



CDS Structure of MLOC_77194






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77194.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77194.1CUST_10315_PI427708083AvailableAvailablecontig_74740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01170.1 -2 2e-30 114 54/65 (83%) 13102.m00028 protein HECT-domain domain containing protein, expressed
TAIR PP10 AT4G38600.2 -2 2e-21 89 43/66 (65%) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049073 REVERSE LENGTH=1794