MLOC_77193 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.327437.340796.37687.68738
LEAShoots from the seedlings (10 cm shoot stage)9.1349511.975512.4299.71982
INF1Young developing inflorescences (5mm)4.597719.5507513.02288.19013
INF2Developing inflorescences (1-1.5 cm)4.432195.144163.002245.99472
ROORoots from the seedlings (10 cm shoot stage)17.35746.402777.9070211.258
NODDeveloping tillers at six leaf stage, 3rd internode7.824912.99279.8884841.3349
CAR5Developing grain, bracts removed (5 DPA)7.762795.542455.767166.95641
CAR15Developing grain, bracts removed (15 DPA)3.461753.081770.7443086.65563



CDS Structure of MLOC_77193






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77193.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77193.1CUST_10314_PI427708083AvailableAvailablecontig_74740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01170.1 -2 3e-35 128 60/72 (83%) 13102.m00028 protein HECT-domain domain containing protein, expressed
TAIR PP10 AT4G38600.1 -2 7e-29 110 50/72 (69%) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888