MLOC_77182 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.374887.977168.363085.68654
LEAShoots from the seedlings (10 cm shoot stage)7.439095.098393.251713.87887
INF1Young developing inflorescences (5mm)21.067520.173820.357613.1969
INF2Developing inflorescences (1-1.5 cm)19.475716.923214.566115.4098
ROORoots from the seedlings (10 cm shoot stage)3.41926.064927.26065.3708
NODDeveloping tillers at six leaf stage, 3rd internode0.1238720.2524371.596521.17983
CAR5Developing grain, bracts removed (5 DPA)8.204027.593258.361296.13203
CAR15Developing grain, bracts removed (15 DPA)2.613662.967082.882394.72242



CDS Structure of MLOC_77182






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77182.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77182.1CUST_13280_PI427708083AvailableAvailablecontig_7467 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g22920.4 +2 3e-126 374 183/257 (71%) 13105.m02322 protein digestive organ expansion factor, putative, expressed
TAIR PP10 AT1G17690.1 +2 7e-73 244 136/285 (48%) | Symbols: NOF1 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). | chr1:6082878-6088157 REVERSE LENGTH=754