MLOC_77132 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains63.623248.646465.868258.3536
LEAShoots from the seedlings (10 cm shoot stage)0.7605423.9749312.18935.16936
INF1Young developing inflorescences (5mm)00.01988390.02180040.0413093
INF2Developing inflorescences (1-1.5 cm)0.0186341000.0232919
ROORoots from the seedlings (10 cm shoot stage)76.335675.129977.643991.3242
NODDeveloping tillers at six leaf stage, 3rd internode00.003513470.006214130.0224598
CAR5Developing grain, bracts removed (5 DPA)0.134090.0839770.390170.210918
CAR15Developing grain, bracts removed (15 DPA)0.8632781.080080.7875112.42781



CDS Structure of MLOC_77132






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77132.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248544.1NoneNoneNoneNone
MLOC_77132.1CUST_18467_PI427708080AvailableAvailablecontig_74489 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35550.1 +1 0.0 601 337/534 (63%) 13106.m03670 protein retrotransposon protein, putative, Ty1-copia subclass, expressed
TAIR PP10 AT2G34790.1 +1 2e-125 386 241/543 (44%) | Symbols: MEE23, EDA28 | FAD-binding Berberine family protein | chr2:14673998-14677237 REVERSE LENGTH=532