MLOC_77105 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.75337.5438610.82859.35275
LEAShoots from the seedlings (10 cm shoot stage)2.825082.958062.619312.50527
INF1Young developing inflorescences (5mm)13.051411.279112.090510.5205
INF2Developing inflorescences (1-1.5 cm)7.245385.748697.10197.438
ROORoots from the seedlings (10 cm shoot stage)8.699466.095257.646588.37085
NODDeveloping tillers at six leaf stage, 3rd internode0.4253240.2586850.4465130.901058
CAR5Developing grain, bracts removed (5 DPA)6.15756.262746.721556.58102
CAR15Developing grain, bracts removed (15 DPA)1.671210.7049021.366273.02871



CDS Structure of MLOC_77105






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77105.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77105.1CUST_16371_PI427708080AvailableAvailablecontig_74339 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48410.1 +1 1e-66 209 103/110 (94%) 13105.m05148 protein 50S ribosomal protein L21, chloroplast precursor, putative, expressed
TAIR PP10 AT4G30930.1 +1 2e-52 172 83/105 (79%) | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270