- Predicted Gene MLOC_77105
MLOC_77105 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 10.7533 | 7.54386 | 10.8285 | 9.35275 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.82508 | 2.95806 | 2.61931 | 2.50527 |
INF1 | Young developing inflorescences (5mm) | 13.0514 | 11.2791 | 12.0905 | 10.5205 |
INF2 | Developing inflorescences (1-1.5 cm) | 7.24538 | 5.74869 | 7.1019 | 7.438 |
ROO | Roots from the seedlings (10 cm shoot stage) | 8.69946 | 6.09525 | 7.64658 | 8.37085 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.425324 | 0.258685 | 0.446513 | 0.901058 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.1575 | 6.26274 | 6.72155 | 6.58102 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.67121 | 0.704902 | 1.36627 | 3.02871 |
CDS Structure of MLOC_77105
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_77105.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g48410.1 |
+1 |
1e-66 |
209 |
103/110 (94%) |
13105.m05148 protein 50S ribosomal protein L21, chloroplast precursor, putative, expressed |
TAIR PP10 |
AT4G30930.1 |
+1 |
2e-52 |
172 |
83/105 (79%) |
| Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270 |