MLOC_77070 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2289620.4205270.3425430.386791
LEAShoots from the seedlings (10 cm shoot stage)0.3381590.03712890.09761320.148582
INF1Young developing inflorescences (5mm)0.8026460.8037291.12490.812218
INF2Developing inflorescences (1-1.5 cm)0.7909121.193230.8297331.12954
ROORoots from the seedlings (10 cm shoot stage)0.2815660.2908570.4203250.393438
NODDeveloping tillers at six leaf stage, 3rd internode0.01555790.02436150.05481660.107819
CAR5Developing grain, bracts removed (5 DPA)0.5711250.5142521.005870.708288
CAR15Developing grain, bracts removed (15 DPA)0.2960050.1290440.1198920.486592



CDS Structure of MLOC_77070






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77070.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_77070.1CUST_16367_PI427708080AvailableAvailablecontig_74178 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g04160.1 +1 0.0 921 474/638 (74%) 13105.m00410 protein pentatricopeptide containing protein, putative
TAIR PP10 AT3G48810.1 +1 1e-160 484 247/572 (43%) Pentatricopeptide repeat (PPR) superfamily protein | chr3:18097048-18099027 FORWARD LENGTH=659