MLOC_77043 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1737440.4190690.1144250.254163
LEAShoots from the seedlings (10 cm shoot stage)0.2319130.3665610.06997190.179547
INF1Young developing inflorescences (5mm)0.1055760.3319510.1273640.136464
INF2Developing inflorescences (1-1.5 cm)0.464110.2392730.1112130.29759
ROORoots from the seedlings (10 cm shoot stage)0.392750.4495680.7057690.514989
NODDeveloping tillers at six leaf stage, 3rd internode0.18279900.06956630.0730311
CAR5Developing grain, bracts removed (5 DPA)1.866971.452610.8020581.21726
CAR15Developing grain, bracts removed (15 DPA)2249.543019.661822.764706.54



CDS Structure of MLOC_77043






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_77043.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372855NoneNoneNoneNone
MLOC_77043.1CUST_6620_PI427708080AvailableAvailablecontig_7408 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g16830.1 -1 7e-115 362 183/295 (62%) 13102.m01882 protein glutelin, putative, expressed
TAIR PP10 AT5G44120.1 -1 2e-48 174 83/193 (43%) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17757432 REVERSE LENGTH=285