MLOC_76805 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.394338.98467.239368.99421
LEAShoots from the seedlings (10 cm shoot stage)20.99184.15685.65338.55496
INF1Young developing inflorescences (5mm)16.835211.18229.0889811.5775
INF2Developing inflorescences (1-1.5 cm)9.6325712.275211.541914.2692
ROORoots from the seedlings (10 cm shoot stage)0.6233554.828416.003075.81422
NODDeveloping tillers at six leaf stage, 3rd internode5.089126.386017.9310120.6072
CAR5Developing grain, bracts removed (5 DPA)10.045810.63910.811112.1187
CAR15Developing grain, bracts removed (15 DPA)0.7290210.4477810.8349511.76236



CDS Structure of MLOC_76805






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76805.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359121NoneNoneNoneNone
MLOC_76805.1CUST_6605_PI427708080AvailableAvailablecontig_72986 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g32100.1 +3 3e-170 504 358/540 (66%) 13111.m03120 protein inducer of CBF expression 1, putative, expressed
TAIR PP10 AT3G26744.4 +3 8e-87 285 180/302 (60%) | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:9832953-9834790 REVERSE LENGTH=494