MLOC_76747 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains332.212220.381216.332266.953
LEAShoots from the seedlings (10 cm shoot stage)133.20821.0829.437753.1651
INF1Young developing inflorescences (5mm)549.329520.318483.249459.784
INF2Developing inflorescences (1-1.5 cm)393.09589.975487.245582.91
ROORoots from the seedlings (10 cm shoot stage)126.315177.127214.837211.371
NODDeveloping tillers at six leaf stage, 3rd internode26.201624.663312.448969.8787
CAR5Developing grain, bracts removed (5 DPA)165.458180.628159.937180.517
CAR15Developing grain, bracts removed (15 DPA)10.87097.3999810.53825.128



CDS Structure of MLOC_76747






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76747.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366082NoneNoneNoneNone
MLOC_76747.1CUST_6598_PI427708080AvailableAvailablecontig_72696 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05900.1 +2 4e-51 173 89/89 (100%) 13101.m00576 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT5G22880.1 +2 4e-50 169 86/89 (97%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145