MLOC_76600 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.0030111.535611.516911.2505
LEAShoots from the seedlings (10 cm shoot stage)15.902611.70555.8272710.2247
INF1Young developing inflorescences (5mm)10.23515.448116.717812.9971
INF2Developing inflorescences (1-1.5 cm)13.809214.173514.627716.8959
ROORoots from the seedlings (10 cm shoot stage)4.815566.06545.883368.1892
NODDeveloping tillers at six leaf stage, 3rd internode9.693046.37326.1177423.6372
CAR5Developing grain, bracts removed (5 DPA)22.266722.445423.272924.7792
CAR15Developing grain, bracts removed (15 DPA)14.990514.42616.178338.1736



CDS Structure of MLOC_76600






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76600.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253022.1NoneNoneNoneNone
MLOC_76600.2CUST_6592_PI427708080AvailableAvailablecontig_72000 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g02464.1 +2 0.0 848 402/447 (90%) 13111.m00177 protein vacuolar-sorting receptor precursor, putative, expressed
TAIR PP10 AT3G52850.1 +2 0.0 748 344/442 (78%) | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623