MLOC_76541 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1094040.4045730.233015
LEAShoots from the seedlings (10 cm shoot stage)0.4799811.015290.5941870.585823
INF1Young developing inflorescences (5mm)0.2141170.7117740.4576310.369263
INF2Developing inflorescences (1-1.5 cm)1.421150.6685110.3227490.895805
ROORoots from the seedlings (10 cm shoot stage)0.1046430.06185910.1823270.0983483
NODDeveloping tillers at six leaf stage, 3rd internode0.277230.9220850.7467522.81812
CAR5Developing grain, bracts removed (5 DPA)2.578793.00563.09592.54025
CAR15Developing grain, bracts removed (15 DPA)0.414550.7414540.518911.18791



CDS Structure of MLOC_76541






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76541.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_76541.1CUST_13262_PI427708083AvailableAvailablecontig_71777 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g20470.1 -3 4e-111 337 164/204 (80%) 13110.m01676 protein MATE efflux family protein, putative, expressed
TAIR PP10 AT5G52450.1 -3 2e-70 230 111/207 (54%) MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486