MLOC_76534 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.683611.83911.319412.7513
LEAShoots from the seedlings (10 cm shoot stage)5.636371.498343.542922.90307
INF1Young developing inflorescences (5mm)0.1135880.07467120.2437070.127287
INF2Developing inflorescences (1-1.5 cm)0.06475160.03064630.2759460.116041
ROORoots from the seedlings (10 cm shoot stage)3.157912.418154.017593.00398
NODDeveloping tillers at six leaf stage, 3rd internode19.265815.65674.6214536.2433
CAR5Developing grain, bracts removed (5 DPA)0.5566870.4893520.6372890.571046
CAR15Developing grain, bracts removed (15 DPA)0.6702470.7744620.629011.78946



CDS Structure of MLOC_76534






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76534.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253093.1NoneNoneNoneNone
MLOC_76534.1NoneAvailableAvailablecontig_71748 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g51060.1 +3 3e-135 414 229/288 (80%) 13101.m05319 protein hydrolase, putative, expressed
TAIR PP10 AT1G51760.1 +3 4e-86 283 159/268 (59%) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440