MLOC_76409 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains89.663968.908275.810787.8664
LEAShoots from the seedlings (10 cm shoot stage)55.345154.712465.386854.3147
INF1Young developing inflorescences (5mm)99.5305115.197134.44108.407
INF2Developing inflorescences (1-1.5 cm)120.155102.552128.517135.655
ROORoots from the seedlings (10 cm shoot stage)89.879383.441690.5187117.806
NODDeveloping tillers at six leaf stage, 3rd internode79.8173129.161157.088431.229
CAR5Developing grain, bracts removed (5 DPA)67.707975.458468.667178.0927
CAR15Developing grain, bracts removed (15 DPA)79.533379.097268.2554194.283



CDS Structure of MLOC_76409






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76409.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252436.1NoneNoneNoneNone
MLOC_76409.1CUST_6575_PI427708080AvailableAvailablecontig_7128 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g28680.1 +1 1e-117 341 156/182 (86%) 13108.m02961 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT4G36800.2 +1 8e-99 292 137/183 (75%) | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184