MLOC_76230 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.43011.560251.653362.09178
LEAShoots from the seedlings (10 cm shoot stage)10.241129.09425.426421.5823
INF1Young developing inflorescences (5mm)3.918954.300624.37554.21403
INF2Developing inflorescences (1-1.5 cm)2.053612.286411.91782.78268
ROORoots from the seedlings (10 cm shoot stage)3.248652.291833.111173.75298
NODDeveloping tillers at six leaf stage, 3rd internode1.064612.488133.756979.64187
CAR5Developing grain, bracts removed (5 DPA)3.45933.681724.093794.54592
CAR15Developing grain, bracts removed (15 DPA)2.009693.377882.368997.56194



CDS Structure of MLOC_76230






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_76230.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_76230.1CUST_16272_PI427708080AvailableAvailablecontig_7062 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g09430.1 -3 0.0 523 247/270 (91%) 13101.m01002 protein expressed protein
TAIR PP10 AT3G21360.1 -3 1e-160 456 212/270 (79%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7522865-7524036 FORWARD LENGTH=330