MLOC_7606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.723214.117816.058813.8179
LEAShoots from the seedlings (10 cm shoot stage)14.60949.6300112.183610.2985
INF1Young developing inflorescences (5mm)15.759919.048818.986315.1097
INF2Developing inflorescences (1-1.5 cm)17.567315.526815.969417.9384
ROORoots from the seedlings (10 cm shoot stage)19.654319.663123.141823.6291
NODDeveloping tillers at six leaf stage, 3rd internode40.699119.289618.92858.4585
CAR5Developing grain, bracts removed (5 DPA)8.7306510.46586.869138.67204
CAR15Developing grain, bracts removed (15 DPA)4.05113.339433.179198.71343



CDS Structure of MLOC_7606






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_7606.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_7606.1CUST_16259_PI427708080AvailableAvailablecontig_139647 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g36630.1 +1 9e-53 169 87/119 (73%) 13103.m04000 protein expressed protein
TAIR PP10 AT4G01897.1 +1 2e-32 115 58/116 (50%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). | chr4:820487-821466 REVERSE LENGTH=122