MLOC_75942 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains349.101294.293264.983288.339
LEAShoots from the seedlings (10 cm shoot stage)130.35497.933896.780986.6413
INF1Young developing inflorescences (5mm)343.553345.602344.596271.339
INF2Developing inflorescences (1-1.5 cm)252.984243.737274.58263.55
ROORoots from the seedlings (10 cm shoot stage)135.49220.764269.176231.503
NODDeveloping tillers at six leaf stage, 3rd internode54.38334.148568.6409116.166
CAR5Developing grain, bracts removed (5 DPA)171.716207.307184.342175.718
CAR15Developing grain, bracts removed (15 DPA)63.535262.922950.2098134.603



CDS Structure of MLOC_75942






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75942.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252926.1NoneNoneNoneNone
MLOC_75942.1CUST_493_PI427708083AvailableAvailablecontig_6953 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38520.4 +3 7e-61 198 103/113 (91%) 13105.m10387 protein 60S ribosomal protein L36-2, putative, expressed
TAIR PP10 AT3G53740.4 +3 2e-49 167 89/112 (79%) Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112