MLOC_75930 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.582733.264915.11582.61413
LEAShoots from the seedlings (10 cm shoot stage)3.20483.225745.253552.35195
INF1Young developing inflorescences (5mm)4.018925.067455.875082.74146
INF2Developing inflorescences (1-1.5 cm)6.419895.755284.689534.8179
ROORoots from the seedlings (10 cm shoot stage)5.603493.328833.64153.21814
NODDeveloping tillers at six leaf stage, 3rd internode3.74344.675956.8128411.4063
CAR5Developing grain, bracts removed (5 DPA)3.302143.246573.153592.26186
CAR15Developing grain, bracts removed (15 DPA)1.849122.087981.090622.96917



CDS Structure of MLOC_75930






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75930.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75930.2CUST_13242_PI427708083AvailableAvailablecontig_6948 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g47650.1 -2 2e-22 97 49/75 (65%) 13101.m04927 protein vacuolar protein sorting-associated protein 16, putative, expressed
TAIR PP10 AT2G38020.2 -2 3e-14 71 38/74 (51%) | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910272-15914190 REVERSE LENGTH=834