MLOC_75912 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.950824.685125.176716.7778
LEAShoots from the seedlings (10 cm shoot stage)16.701914.280111.635210.1675
INF1Young developing inflorescences (5mm)22.491920.131518.931113.6215
INF2Developing inflorescences (1-1.5 cm)22.891921.286222.151719.1991
ROORoots from the seedlings (10 cm shoot stage)6.6499111.88913.53510.3246
NODDeveloping tillers at six leaf stage, 3rd internode10.48617.283124.1224618.2997
CAR5Developing grain, bracts removed (5 DPA)30.8524.910629.536620.9829
CAR15Developing grain, bracts removed (15 DPA)12.329512.292812.603221.3622



CDS Structure of MLOC_75912






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75912.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75912.2NoneAvailableAvailablecontig_69372 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g29170.2 +2 1e-72 244 116/130 (89%) 13103.m03348 protein sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
TAIR PP10 AT2G26260.2 +2 2e-59 207 98/129 (76%) | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 | chr2:11178586-11182872 FORWARD LENGTH=473