MLOC_75885 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.103021.60921.222591.02527
LEAShoots from the seedlings (10 cm shoot stage)1.963071.206361.90961.19266
INF1Young developing inflorescences (5mm)1.790232.787982.433371.3772
INF2Developing inflorescences (1-1.5 cm)2.847132.829882.32192.29511
ROORoots from the seedlings (10 cm shoot stage)0.9354671.276862.493251.18635
NODDeveloping tillers at six leaf stage, 3rd internode0.8514421.19681.555943.38914
CAR5Developing grain, bracts removed (5 DPA)2.361231.845392.289781.55274
CAR15Developing grain, bracts removed (15 DPA)0.8787750.7265470.6427591.36385



CDS Structure of MLOC_75885






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75885.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75885.1NoneAvailableAvailablecontig_69281 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g07120.1 +2 4e-26 115 57/70 (81%) 13102.m00801 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT2G02560.2 +2 3e-18 89 48/71 (68%) | Symbols: CAND1, ATCAND1, ETA2, TIP120, HVE | cullin-associated and neddylation dissociated | chr2:690345-697342 FORWARD LENGTH=1217