MLOC_75842 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.11468.8247411.556710.8804
LEAShoots from the seedlings (10 cm shoot stage)4.898035.935825.352034.16054
INF1Young developing inflorescences (5mm)5.770396.683444.379315.19378
INF2Developing inflorescences (1-1.5 cm)1.21120.7150190.5163590.999861
ROORoots from the seedlings (10 cm shoot stage)13.50711.598815.328613.1632
NODDeveloping tillers at six leaf stage, 3rd internode8.690216.1266113.847919.2883
CAR5Developing grain, bracts removed (5 DPA)00.097979500.126806
CAR15Developing grain, bracts removed (15 DPA)0.4777010.245580.2425450.856149



CDS Structure of MLOC_75842






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75842.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75842.1CUST_16223_PI427708080AvailableAvailablecontig_69115 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g39590.1 +2 4e-81 249 152/195 (78%) 13106.m04103 protein OsIAA23 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G14550.1 +2 2e-41 146 87/206 (42%) | Symbols: IAA14, SLR | indole-3-acetic acid inducible 14 | chr4:8348521-8349923 REVERSE LENGTH=228