MLOC_75731 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.166595.399049.582755.50038
LEAShoots from the seedlings (10 cm shoot stage)1.594894.345821.671651.60425
INF1Young developing inflorescences (5mm)12.953811.727113.05488.12187
INF2Developing inflorescences (1-1.5 cm)5.602095.53385.008635.08803
ROORoots from the seedlings (10 cm shoot stage)10.83877.987516.362168.05894
NODDeveloping tillers at six leaf stage, 3rd internode1.198363.02962.180647.17374
CAR5Developing grain, bracts removed (5 DPA)5.330025.492017.051544.77854
CAR15Developing grain, bracts removed (15 DPA)0.4121011.066650.9148291.29906



CDS Structure of MLOC_75731






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75731.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75731.1CUST_13236_PI427708083AvailableAvailablecontig_687584 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g14890.2 -3 5e-17 76 51/58 (88%) 13103.m01740 protein AGAP008572-PA, putative, expressed
TAIR PP10 AT4G00026.1 -3 2e-15 71 47/59 (80%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11634-13285 REVERSE LENGTH=269