MLOC_75673 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.828582.823911.141112.22965
LEAShoots from the seedlings (10 cm shoot stage)10.969513.597824.57512.3107
INF1Young developing inflorescences (5mm)0.7172770.5543410.9279020.529783
INF2Developing inflorescences (1-1.5 cm)0.5170520.786280.6298960.720624
ROORoots from the seedlings (10 cm shoot stage)0.14606400.3573990.0987095
NODDeveloping tillers at six leaf stage, 3rd internode3.108395.205255.8611815.9928
CAR5Developing grain, bracts removed (5 DPA)4.582926.181333.480484.83686
CAR15Developing grain, bracts removed (15 DPA)0.1771920.2165650.1742490.543573



CDS Structure of MLOC_75673






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75673.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366783NoneNoneNoneNone
MLOC_75673.1CUST_6535_PI427708080AvailableAvailablecontig_68567 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g15300.1 -2 2e-30 117 119/171 (70%) 13110.m01319 protein expressed protein
TAIR PP10 AT3G50685.1 -2 2e-21 90 74/103 (72%) unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:18834272-18834748 REVERSE LENGTH=158