MLOC_75653 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains353.542314.626333.672339.642
LEAShoots from the seedlings (10 cm shoot stage)148.666195.592174.063151.295
INF1Young developing inflorescences (5mm)19.436517.689519.887516.1224
INF2Developing inflorescences (1-1.5 cm)29.107334.176143.765137.1676
ROORoots from the seedlings (10 cm shoot stage)367.245373.14436.648472.363
NODDeveloping tillers at six leaf stage, 3rd internode352.866315.675205.4541089.86
CAR5Developing grain, bracts removed (5 DPA)371.651371.733340.928343.382
CAR15Developing grain, bracts removed (15 DPA)27.112827.310130.232364.0227



CDS Structure of MLOC_75653






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75653.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359558NoneNoneNoneNone
MLOC_75653.1CUST_13534_PI427708083AvailableAvailablecontig_6852 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g24550.6 +3 2e-144 424 203/220 (92%) 13105.m02508 protein Papain family cysteine protease domain containing protein, expressed
TAIR PP10 AT1G02305.1 +3 2e-120 362 171/220 (78%) Cysteine proteinases superfamily protein | chr1:455816-457974 FORWARD LENGTH=362