- Predicted Gene MLOC_75601
MLOC_75601 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 4.05745 | 2.86696 | 1.89881 | 2.73379 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.57665 | 0.59212 | 0.524531 | 0.700499 |
INF1 | Young developing inflorescences (5mm) | 0.534074 | 0.595714 | 0.789945 | 0.564033 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.215424 | 0.129736 | 0.0936963 | 0.181587 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.27096 | 1.33889 | 1.37784 | 1.39126 |
NOD | Developing tillers at six leaf stage, 3rd internode | 4.879 | 5.2851 | 12.7268 | 18.2679 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.0991325 | 0.0631033 | 0.0309021 | 0.0664943 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0223993 | 0 | 0 | 0.0767502 |
CDS Structure of MLOC_75601
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_75601.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g43940.1 |
+2 |
8e-46 |
164 |
165/276 (60%) |
13102.m04889 protein AP2 domain containing protein, expressed |
TAIR PP10 |
AT5G11590.1 |
+2 |
2e-27 |
110 |
64/83 (77%) |
| Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236 |