MLOC_75587 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.398452.21793.011030
LEAShoots from the seedlings (10 cm shoot stage)1.222571.074521.11850
INF1Young developing inflorescences (5mm)9.1780310.896411.30570
INF2Developing inflorescences (1-1.5 cm)8.615159.084049.387530
ROORoots from the seedlings (10 cm shoot stage)0.7329972.31481.013710
NODDeveloping tillers at six leaf stage, 3rd internode0.8360590.8977422.286720
CAR5Developing grain, bracts removed (5 DPA)3.479273.848583.31730
CAR15Developing grain, bracts removed (15 DPA)1.604871.683390.9010440



CDS Structure of MLOC_75587






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75587.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75587.1CUST_10110_PI427708083AvailableNonecontig_6828 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g07110.1 -1 2e-28 119 61/81 (75%) 13101.m00710 protein BRCA2 repeat family protein, expressed
TAIR PP10 AT4G00020.1 -1 2e-12 69 36/72 (50%) | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | BREAST CANCER 2 like 2A | chr4:4107-10364 REVERSE LENGTH=1151