MLOC_7555 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.30750800.2670540.253067
LEAShoots from the seedlings (10 cm shoot stage)0.160446000.161962
INF1Young developing inflorescences (5mm)0.352760.2685490.6369070.368152
INF2Developing inflorescences (1-1.5 cm)0.5499040.6461630.2099360.57297
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.07539610.02523440.1850130.181737
CAR5Developing grain, bracts removed (5 DPA)1.193160.9047050.6220340.864207
CAR15Developing grain, bracts removed (15 DPA)00.19377900.508118



CDS Structure of MLOC_7555






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_7555.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_7555.1NoneAvailableAvailablecontig_139519 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05860.1 -2 4e-52 184 85/90 (94%) 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT4G35800.1 -2 2e-45 164 74/90 (82%) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839