MLOC_7554 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.0675466 | 0.494591 | 0.296297 | 0.314312 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.20403 | 0.0769464 | 0.18521 | 0.150873 |
INF1 | Young developing inflorescences (5mm) | 1.02574 | 1.31136 | 1.3517 | 0.935262 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.56227 | 1.44083 | 1.31045 | 1.47254 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.274069 | 0.20291 | 0.193413 | 0.262119 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0760852 | 0.11494 | 0.162298 | 0.428941 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.07152 | 0.866249 | 0.788718 | 0.825643 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.391842 | 0.318587 | 0.299717 | 0.754759 |
CDS Structure of MLOC_7554
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_7554.5
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g05860.1 |
-1 |
0.0 |
1375 |
704/808 (87%) |
13105.m00623 protein retrotransposon protein, putative, unclassified, expressed |
TAIR PP10 |
AT4G35800.1 |
-1 |
0.0 |
1317 |
666/808 (82%) |
| Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839 |