MLOC_7554 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06754660.4945910.2962970.314312
LEAShoots from the seedlings (10 cm shoot stage)0.204030.07694640.185210.150873
INF1Young developing inflorescences (5mm)1.025741.311361.35170.935262
INF2Developing inflorescences (1-1.5 cm)1.562271.440831.310451.47254
ROORoots from the seedlings (10 cm shoot stage)0.2740690.202910.1934130.262119
NODDeveloping tillers at six leaf stage, 3rd internode0.07608520.114940.1622980.428941
CAR5Developing grain, bracts removed (5 DPA)1.071520.8662490.7887180.825643
CAR15Developing grain, bracts removed (15 DPA)0.3918420.3185870.2997170.754759



CDS Structure of MLOC_7554






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_7554.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_7554.5CUST_16192_PI427708080AvailableAvailablecontig_139519 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05860.1 -1 0.0 1375 704/808 (87%) 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT4G35800.1 -1 0.0 1317 666/808 (82%) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839