MLOC_75487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.750310.656113.008211.7608
LEAShoots from the seedlings (10 cm shoot stage)14.15113.425313.972510.7269
INF1Young developing inflorescences (5mm)14.108920.995418.553913.5401
INF2Developing inflorescences (1-1.5 cm)25.909230.469327.218227.3697
ROORoots from the seedlings (10 cm shoot stage)14.531716.936211.791517.2073
NODDeveloping tillers at six leaf stage, 3rd internode11.580415.220614.433941.4001
CAR5Developing grain, bracts removed (5 DPA)16.482719.216916.345114.9034
CAR15Developing grain, bracts removed (15 DPA)6.502075.55126.2985512.9405



CDS Structure of MLOC_75487






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75487.1CUST_10098_PI427708083AvailableAvailablecontig_6802 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37520.1 +1 4e-97 313 153/160 (96%) 13111.m03672 protein BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed
TAIR PP10 AT4G02680.1 +1 7e-84 276 130/160 (81%) | Symbols: EOL1 | ETO1-like 1 | chr4:1181202-1184328 REVERSE LENGTH=888