MLOC_75411 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5633260.6875480.5087370.671343
LEAShoots from the seedlings (10 cm shoot stage)2.327342.980093.749112.47755
INF1Young developing inflorescences (5mm)0.970841.30121.152871.05182
INF2Developing inflorescences (1-1.5 cm)0.9765931.130610.8811631.21919
ROORoots from the seedlings (10 cm shoot stage)0.2444570.2164430.4488390.283836
NODDeveloping tillers at six leaf stage, 3rd internode0.5628250.6678221.915462.58914
CAR5Developing grain, bracts removed (5 DPA)0.5050330.4599960.4969040.514491
CAR15Developing grain, bracts removed (15 DPA)0.1415530.07140810.1438740.295134



CDS Structure of MLOC_75411






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75411.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367724NoneNoneNoneNone
MLOC_75411.1CUST_6504_PI427708080AvailableAvailablecontig_67853 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g01210.1 -3 0.0 803 481/648 (74%) 13112.m00030 protein HCF152, putative, expressed
TAIR PP10 AT3G09650.1 -3 0.0 649 395/685 (58%) | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2958704-2961040 FORWARD LENGTH=778