MLOC_75371 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8054680.5313170.9678680.556291
LEAShoots from the seedlings (10 cm shoot stage)0.9944750.9202511.67460.803407
INF1Young developing inflorescences (5mm)1.404381.134571.244730.811113
INF2Developing inflorescences (1-1.5 cm)1.608811.226851.32111.17506
ROORoots from the seedlings (10 cm shoot stage)1.986761.204551.125641.25573
NODDeveloping tillers at six leaf stage, 3rd internode0.590351.336941.640763.5263
CAR5Developing grain, bracts removed (5 DPA)0.3651330.288910.3100370.232248
CAR15Developing grain, bracts removed (15 DPA)0.2036990.2054090.07486470.339438



CDS Structure of MLOC_75371






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75371.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75371.1CUST_10078_PI427708083AvailableAvailablecontig_67751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g07050.1 -2 1e-36 102 45/52 (87%) 13105.m00763 protein pre-mRNA-processing-splicing factor 8, putative, expressed
TAIR PP10 AT1G80070.1 -2 4e-29 81 34/52 (65%) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359