MLOC_75294 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.192752.065042.536091.69046
LEAShoots from the seedlings (10 cm shoot stage)11.25174.414363.715915.46555
INF1Young developing inflorescences (5mm)3.523822.376752.555432.13451
INF2Developing inflorescences (1-1.5 cm)8.368867.342148.30767.64002
ROORoots from the seedlings (10 cm shoot stage)2.98354.507633.77054.59194
NODDeveloping tillers at six leaf stage, 3rd internode10.070415.279110.18345.2377
CAR5Developing grain, bracts removed (5 DPA)19.858318.638316.945415.666
CAR15Developing grain, bracts removed (15 DPA)0.7207980.8746370.7776061.50074



CDS Structure of MLOC_75294






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75294.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376563NoneNoneNoneNone
MLOC_75294.1CUST_6494_PI427708080AvailableAvailablecontig_67561 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50330.1 +3 0.0 1207 586/720 (81%) 13102.m05711 protein RNA-dependent RNA polymerase, putative, expressed
TAIR PP10 AT1G14790.1 +3 0.0 1192 631/1106 (57%) | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107