MLOC_75283 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains210.353158.231157.01166.124
LEAShoots from the seedlings (10 cm shoot stage)100.83956.028569.297964.5902
INF1Young developing inflorescences (5mm)175.099173.139175.633145.477
INF2Developing inflorescences (1-1.5 cm)113.852109.31108.941119.407
ROORoots from the seedlings (10 cm shoot stage)122.697133.498157.438157.794
NODDeveloping tillers at six leaf stage, 3rd internode17.420521.853452.877989.2065
CAR5Developing grain, bracts removed (5 DPA)117.883120.447130.805118.2
CAR15Developing grain, bracts removed (15 DPA)37.88336.768429.070279.9323



CDS Structure of MLOC_75283






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75283.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75283.1CUST_10065_PI427708083AvailableAvailablecontig_67539 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g02510.3 -2 1e-111 332 179/195 (92%) 13106.m00175 protein ribosomal protein L13, putative, expressed
TAIR PP10 AT3G49010.3 -2 1e-96 293 159/194 (82%) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206